PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01670.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 276aa    MW: 31165.9 Da    PI: 5.046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01670.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.3e-2195145256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+ge
  Rsa1.0_01670.1_g00004.1  95 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDQAAYQLRGE 145
                              59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-3494153No hitNo description
PROSITE profilePS5103223.14395152IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2395153IPR016177DNA-binding domain
SMARTSM003805.2E-3895158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-3395153IPR001471AP2/ERF domain
PRINTSPR003671.9E-1196107IPR001471AP2/ERF domain
PfamPF008475.5E-1596145IPR001471AP2/ERF domain
PRINTSPR003671.9E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAAIDMFSSS TDHSDPFKEE LMKVLNPFTN SLSSLPPPVP NTIFGFNQST PLGLNQLTPY  60
QIHQIQNQLN QRRNTNIANL SPKPVPMKNM ATQKLYRGVR QRHWGKWVAE IRLPKNRTRL  120
WLGTFDTAEE AAMAYDQAAY QLRGELARLN FPHIKHEYGY GGGDRIFKPL HPSVEAKLEA  180
ICQSLRKTEN DELPCSETEP FPPKAEYQET EFGFLRADEN SFSDESLVGS SSPESGITTT  240
FLDFSDSGCD EIGSFVLQKF PSVEIDWDAI NKLSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2294152160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A8e-2291152163ATERF1
2gcc_A8e-2291152163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892600.0AC189260.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666066.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
RefseqXP_013664417.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-159ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLM4D5S60.0M4D5S6_BRARP; Uncharacterized protein
STRINGBra011833.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-147ERF family protein